Taxonomy
Taxonomy may refer to either the classification of things, or the principles underlying the classification. Almost anything, animate objects, inanimate objects, places, and events, may be classified according to some taxonomic scheme. |
21. SuperTree
Implements various supertree building methods. Available in Linux/Unix and PC versions.
http://www.tcd.ie/Botany/NS/SuperTree.html
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22. TreeMap
Experimental program for comparing host and parasite trees.
http://taxonomy.zoology.gla.ac.uk/rod/treemap.html
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23. RadCon
A package implementing a wide range of consensus methods, including reduced consensus, and for calculation of MRP supertrees. Currently only available for Macs.
http://taxonomy.zoology.gla.ac.uk/~jthorley/radcon/radcon.html
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24. NCBI Taxonomy Homepage
The NCBI Taxonomy Homepage
http://www3.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html
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25. Phylo-Win
Graphical color interface for molecular phylogenetic inference. It performs neighbor-joining, parsimony, and maximum likelihood methods and bootstrap with any of them.
http://pbil.univ-lyon1.fr/software/phylowin.html
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26. Tree Puzzle
Computer program to reconstruct phylogenetic trees from molecular sequence data by maximum likelihood.
http://www.tree-puzzle.de/
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28. Glossary of Phylogenetic Systematics
An annotated, extensive hypertext glossary of the terminology of Phylogenetic Systematics, with a discussion and criticsm of mainstream Computer Cladistics.
http://www.bechly.de/glossary.htm
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29. PAML
Phylogenetic analyses of DNA or protein sequences using maximum likelihood.
http://abacus.gene.ucl.ac.uk/software/paml.html
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30. Introduction to Cladistics
Cladistics is a particular method of hypothesizing relationships among organisms based on the idea that members of a group share a common evolutionary history.
http://www.ucmp.berkeley.edu/clad/clad1.html
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